Scaffold Ga0209332_1004404

Overview

Basic Information

• Taxon OID: 3300027439
• Scaffold ID: Ga0209332_1004404
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2968
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015836	Metagenome / Metatranscriptome	251	Y
F025536	Metagenome / Metatranscriptome	201	Y
F042486	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209332_10044043	F015836	AGG	MASRRQDGFSLLELMITVSFGLVMAGVTFIAVRPMLNQSHMNSAYDTTLMALRNTRNLAITQAHEYYLVFNPAGFPAGTIQVEYQPPAIGNGAAPPLLQVITYSIPSDVTFGVQTGFPANAPDGFGTGANAIDFGQGLAGAPMNYVIFMPDGSSQAGVADSSGAYNSGVVYLTRPGDSIFSSRAVSVWGATGRIRGWRLNQPAGVATWVQQ
Ga0209332_10044044	F042486	N/A	MVALNSDNLIADWSAAKWLLWTGLYLGLGILAPWVMIGAWAHQHRSNLKPRLRELFQHGELGLVSLLLASSVIWDLQKSQYMPYTIALGSVFLAATGVMAGNVWIESYCRRSTNSDFHPERGWRDSWSLALLVFSIAIVTEILLDRFAKVAAL
Ga0209332_10044045	F025536	AGGTGG	VSAPAPALAVESRRPVTMRLADPAAMLAYLSLMFGALLVVFPISFPRIIVQSWQNASLMSTMILFTVLLNVAIYLRVAHVRSAKPGIMAASCLGCVPVLVLVGLNFWLHATIAHTLSGYVPNAAARVDEEILAHTYFALVAAIFTPFLIIRFGQQFRQKRS