Scaffold Ga0207994_1098039

Overview

Basic Information

• Taxon OID: 3300027416
• Scaffold ID: Ga0207994_1098039
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.757 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 589
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008346	Metagenome	335	Y
F059861	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207994_10980391	F008346	AGGAG	MPIKLKQSAKIRDRATGKITTEHYYLKCMTLQELNDYIESSSAKKKVIQKCKNE
Ga0207994_10980392	F059861	N/A	DLPYGEAGEKFVLSIINRKHPMAYKMEGYFIEYDIMIPEIQKTVEVKRDKHTDRTGNAFIETYCNKIESGINASTSDYWAYLTKTKLYWIKSNDLKICILENNIPEGKNYMIDGKIIDAYLIPIDIFKNYCMRIDTLTEEQICQLN