NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208950_1125486

Scaffold Ga0208950_1125486


Overview

Basic Information
Taxon OID3300027413 Open in IMG/M
Scaffold IDGa0208950_1125486 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_54_BLW_10 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)510
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameMonterey Bay, California, USA
CoordinatesLat. (o)36.25Long. (o)-122.2099Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006934Metagenome361Y
F010800Metagenome299Y

Sequences

Protein IDFamilyRBSSequence
Ga0208950_11254861F010800N/ANKNTGATYFLNEKEKANFFIKNKLQNYNETNLTEQRRIRINKMLDVVANLCVVGASILATLLYIQNY
Ga0208950_11254862F006934N/AMTRLDAEYLEHSTYVDYSEPKVSFITGKLIDDKKVIAEEWLLKPNFIPAKVTSSGGNDLAYNSRSVVVIGTTLQCYRKACEMLKTKGWQQKDCWDVELKPI

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