Scaffold Ga0208311_1021217

Overview

Basic Information

• Taxon OID: 3300027387
• Scaffold ID: Ga0208311_1021217
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1562A-02 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1613
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2105
  • Long. (^o): -123.7516

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034542	Metagenome	174	Y
F071126	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208311_10212171	F071126	N/A	GLYLEKGYILAVGYIGNGSTAVSGGLSPSGITIWSQGGFY
Ga0208311_10212172	F034542	AGGCGG	VSRRRGSDNFNLRPFKATNPAELPKTVKGSDNTKELNSPLPFKRRFRPALNTKDFSVTSEYDYASLWVRWRRGYELSMYSQQAYGGLTYSFKYFVSGTPGLGVFLPGMCFMYPTTRTDMRMHMVGIRPRDSFNFLNFGYSIVSVTDYDANTYAVRLSSNFGAPISFFTGEVLSNRFRADGTDKEYGFNNYTVTAVGINNVPVNPSYAPIFNTLFLSHGESTSWAVVDENTLAIPATGPPAVGEYLTTEMRSQCTCSDFLARENFNLYDASIRRKYPRTRPQNFDPGYYDAGVDGSPRLVDSSDNPGFARTFGFIYINQIYNIPSFSEATYSDPNFFYYQPKWCKHIYAAMWDMQRAYNQGVATGPWLPQPTDEPLNEYYREYFEKELARQTTFLKREKDLVWWQRYSPAKDDMPTHMMYPDMYNMMTKTLNAGDLAALNTLQGRSFEMFTIDEFNPFDPASFVVNTYDGGTYENGVLVNQPTNIFDGGQYLNGVI