Scaffold Ga0209010_1000485

Overview

Basic Information

• Taxon OID: 3300027370
• Scaffold ID: Ga0209010_1000485
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12662
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (82.35%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007233	Metagenome / Metatranscriptome	355	Y
F033134	Metagenome	178	Y
F037842	Metagenome / Metatranscriptome	167	N
F044617	Metagenome / Metatranscriptome	154	N
F065986	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209010_100048510	F033134	AGGA	MKQEQESKQLITFSSLHIEVLGPRELGNSQQAIRGVTEFLHGVELDVGKLLRERAEMSPILEGFRLRFG
Ga0209010_100048511	F007233	GGAG	MANRKRKEHKRQLSMDTFSDGLKGKVLESVSISNELECRYISLEFDDKTELTITLDTRLTGKLELFDCTTGDQRLVRKIGLIPDDAPVWRPKD
Ga0209010_10004856	F044617	AGGA	MSTSLKPSRQMPAVTAITAEERRKLDERIRDKHQRLRNKYPELYGKVVDWIHHYVEDGTLYVCIRFQDKTDFALEFSPQIVRVGTELCDSATDDFDVIRNYYQEQRE
Ga0209010_10004857	F065986	GGA	MSNIAKRQGRMIRKGKEVRYGSVRIDLIGPTELLHNREAKGAAIDFLRTEILASKDWLKDCARISPSLKRFRLVSIRT
Ga0209010_10004859	F037842	AGGAGG	LKQKTVKARGEGVEYPALTGKVIRQVRFVNDEDYTALTIEFDDSTLVSFRFKANIAFSIDPELSTVKDGNIVKWRELKTRPIMRRVARR