Scaffold Ga0209010_1000045

Overview

Basic Information

• Taxon OID: 3300027370
• Scaffold ID: Ga0209010_1000045
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 56561
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (84.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003387	Metagenome / Metatranscriptome	490	Y
F033531	Metagenome / Metatranscriptome	177	Y
F055901	Metagenome / Metatranscriptome	138	N
F095823	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209010_100004519	F033531	AGG	MKHEPKVISMQRAFAFRLDAILTGEEAIVLRALAGGLTDRQVCHELRMNSNTFLSMMRDMREKIHMADNVSLIEWAKERIKGVDPRIDKWTGTPFLSRSSLRRTQ
Ga0209010_100004525	F095823	N/A	MRTSTRKNACSSVDILRAKNYQAERESPPSECKLTELNRKNMPRHDERGSDMPRDFSEAEMSWIVEAGGGRYVGVMNEIPGNVECIVLFTSPQTRSTLALPSSRLTVEAVREQLAKSDAAFNDAASK
Ga0209010_100004544	F055901	GGAGG	MTCPQCNEHIPASALWTPAGFSGVVCPHCQAALRPKPVSAILVFAVSFGLGDLALMFLRHKGAEFWQACLGFFVVFTVVFALAAPVFLRMRLKDHGDPHWSGHRA
Ga0209010_10000458	F003387	GGAG	MEKQFSALGYWLGLICTVLALILRVVNAVNLIPPHLGAAGGNAISYLSFFHGAALFFLLAIASWCRIPKS