Basic Information | |
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Taxon OID | 3300027370 Open in IMG/M |
Scaffold ID | Ga0209010_1000028 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 80253 |
Total Scaffold Genes | 78 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 58 (74.36%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Thunder Bay, Ontario, Canada | |||||||
Coordinates | Lat. (o) | 49.08 | Long. (o) | -89.38 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F007988 | Metagenome / Metatranscriptome | 341 | Y |
F012713 | Metagenome / Metatranscriptome | 278 | Y |
F072570 | Metagenome / Metatranscriptome | 121 | N |
F089293 | Metagenome | 109 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209010_100002820 | F072570 | N/A | MSASITLFYYLWIAPHVLETIILFAMVRRGLHRQFPMFFLYISFEIAQCFCLLYVSQYISYFSEVYFQVYAVGLAISAAIRFAVIYELFCHFFRRYPAISGAGKLLFRAASLVLLLTALGLAVSAPGNAPAASLNDATYVALKTTTFAADRAVSILQGGLLISLFLFSRYFVLSWRSPAFGIALGMGTFAIAEFANTALRLYVPFSNKLYDRAAMGIYHFCVLIWILYVVRPEPELRFELRSLPTYDLEIWNQELERLLRQ |
Ga0209010_100002822 | F012713 | N/A | MTLHSALEDLQETTLRAVAGCLNRLEYLSGLRDKAGSYGHWGLARVYGDSAAKKALARAHRSLLSRVLAMPIRNLVEDAKQSSEIAGVSPDAYVERLATTTPNLLPHGPGAGSARHLSSVLHALSSLLKNPKGDANPRA |
Ga0209010_10000283 | F007988 | GGAGG | MCKKALLTFTVLALASLTAFAANKDGIVLSKDGRMTIATKPTPSVTRTERNEAGLVHIYDNLGTAYPKGEYWCCEGFTITGPTAITGFPEYWSAAAFTPSAAHTVTKVEVAVGYVEGYNGLIIGLYSDASGVPGKAIKTWSVTGLPNFGACCAVATATDSTGISVTGGTQYWIVVKTNSKSSNTYGAWNVNDTDQVDSAPAAQYCSQDKGGSCSTNDKWTAFSSQPGLAFAVLGK |
Ga0209010_100002849 | F089293 | N/A | VSKWTRSRRDPGRTYDDEAVRELRKDVIRVRELVEIGLEAESDYVDLINKLEPGMTKDRRKELIKQFRDAVYERQRGQQTGQQRGLPRR |
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