NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209010_1000028

Scaffold Ga0209010_1000028


Overview

Basic Information
Taxon OID3300027370 Open in IMG/M
Scaffold IDGa0209010_1000028 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)80253
Total Scaffold Genes78 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)58 (74.36%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007988Metagenome / Metatranscriptome341Y
F012713Metagenome / Metatranscriptome278Y
F072570Metagenome / Metatranscriptome121N
F089293Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0209010_100002820F072570N/AMSASITLFYYLWIAPHVLETIILFAMVRRGLHRQFPMFFLYISFEIAQCFCLLYVSQYISYFSEVYFQVYAVGLAISAAIRFAVIYELFCHFFRRYPAISGAGKLLFRAASLVLLLTALGLAVSAPGNAPAASLNDATYVALKTTTFAADRAVSILQGGLLISLFLFSRYFVLSWRSPAFGIALGMGTFAIAEFANTALRLYVPFSNKLYDRAAMGIYHFCVLIWILYVVRPEPELRFELRSLPTYDLEIWNQELERLLRQ
Ga0209010_100002822F012713N/AMTLHSALEDLQETTLRAVAGCLNRLEYLSGLRDKAGSYGHWGLARVYGDSAAKKALARAHRSLLSRVLAMPIRNLVEDAKQSSEIAGVSPDAYVERLATTTPNLLPHGPGAGSARHLSSVLHALSSLLKNPKGDANPRA
Ga0209010_10000283F007988GGAGGMCKKALLTFTVLALASLTAFAANKDGIVLSKDGRMTIATKPTPSVTRTERNEAGLVHIYDNLGTAYPKGEYWCCEGFTITGPTAITGFPEYWSAAAFTPSAAHTVTKVEVAVGYVEGYNGLIIGLYSDASGVPGKAIKTWSVTGLPNFGACCAVATATDSTGISVTGGTQYWIVVKTNSKSSNTYGAWNVNDTDQVDSAPAAQYCSQDKGGSCSTNDKWTAFSSQPGLAFAVLGK
Ga0209010_100002849F089293N/AVSKWTRSRRDPGRTYDDEAVRELRKDVIRVRELVEIGLEAESDYVDLINKLEPGMTKDRRKELIKQFRDAVYERQRGQQTGQQRGLPRR

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.