NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209010_1000025

Scaffold Ga0209010_1000025


Overview

Basic Information
Taxon OID3300027370 Open in IMG/M
Scaffold IDGa0209010_1000025 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)91640
Total Scaffold Genes84 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)63 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000323Metagenome / Metatranscriptome1300Y
F013206Metagenome / Metatranscriptome273Y
F014422Metagenome / Metatranscriptome263Y
F018035Metagenome / Metatranscriptome237Y

Sequences

Protein IDFamilyRBSSequence
Ga0209010_100002551F018035GGAGGMKRNLCICIVVFVVVVPALYAAEPGHSSPYVQGTVVHVQQHKVYSPDSMIGGSNPSDAPLTSRYYAYEVSVRVDCTTYVGRYETPFNYIPSEFTSNQTIQVRLTKHVMYFDLPNDPDMRMGIVRRRSDCGQNR
Ga0209010_100002556F000323AGGAGMGEFLFVLLLSSSFLAAQDNNPSATSDHNSKSDKGDVTVQGCVGRLSGDYVLTKQDPAVTYELQATGKIKLRKYLGQRVEVTGSEAPTMSTSSDALTKMGSASPVTITITSIKTISKECTVH
Ga0209010_100002576F013206GGAGMTNDRELDTWREQWSSVAEPPAEFQRKVQERIKRQERRFMLGNLLAVIAFLGLLIFALFLRHRSTWMGPGWSTGLIVLVFVSAACRMWFSRGTWHPQTQSTRAFVELWHKRVTARIRLLRISIYLLLGWIIFCAILKAANWRTIGQDVGTHPKVWEVVLVACVLMQYPVIWYGVDWLRRRKLAELNEVEKIMNEMDGKSVP
Ga0209010_100002579F014422N/AMSIKLLPASVNPVDPPDVSTSLVPLTQRAITMRAGQISLVPSTEAFAWSASTRRGGANHIDGTPVEDSQSDETGRTGWEYLSGWAWSHSVERTAIAHYLFYAAGPAGWSGRLIDLYA
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