Scaffold Ga0209010_1000021

Overview

Basic Information

• Taxon OID: 3300027370
• Scaffold ID: Ga0209010_1000021
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 98002
• Total Scaffold Genes: 103
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 82 (79.61%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000072	Metagenome / Metatranscriptome	2651	Y
F047881	Metagenome / Metatranscriptome	149	Y
F059707	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209010_1000021102	F059707	GGA	MQRELGSILIHSPESLHDLAARVGTVSDEHEYGDNQVVWFENGRRVLDYMEADERFSAASFRDSLEEQGVAVNRNDLIALIDNMRGLSKQWRSSIGKRGELVFYVDAC
Ga0209010_100002129	F047881	N/A	MTGLPRQNGALRVSPMDRHGRLISPPVLRAAEEVSNRAILHAVKQFVDPAIAANLLEEAAATVSRVLTAKNADEGSVRNLESYLFRAFLRRLNRVKKRQSFVAKAVELEAQLPRVSGDPGKALETKLFIDEFLMHCDPVIRDMLCRRMAGCSWKEIGSAYGISSHAAESKFSQTLQKVRSKLGLK
Ga0209010_100002159	F000072	GGA	MDVERIIDEIEQLQEMFEAPDIRPLKVSDISAANRRHGEMLAHSPWFRLWQDFGVCCRAESPVLRPRESES