Scaffold Ga0209010_1000017

Overview

Basic Information

• Taxon OID: 3300027370
• Scaffold ID: Ga0209010_1000017
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 109676
• Total Scaffold Genes: 120
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 94 (78.33%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000072	Metagenome / Metatranscriptome	2651	Y
F000219	Metagenome / Metatranscriptome	1551	Y
F000540	Metagenome / Metatranscriptome	1043	Y
F001474	Metagenome / Metatranscriptome	688	Y
F008970	Metagenome / Metatranscriptome	325	Y
F015127	Metagenome / Metatranscriptome	257	Y
F035004	Metagenome / Metatranscriptome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209010_1000017109	F035004	GGAG	MQYDPSLKEIHAYLDHETPRILSLPLAVLITGALSQVDATIVLANRVYDSIFHSANRD
Ga0209010_1000017111	F000072	GGA	MDVERIIDEIEQLQEMFEAPDIRPLSASDISAANRRHDEMLADSPWFRLWQDFGVCCRAESPVLRPGETES
Ga0209010_1000017112	F000540	GGA	MAKKKAANLLPKLTETEQDLLSHIQHGYQLETDSLGGHPVLRHLKDNEEMRPPSANRTTIKALERRGLISPGKGLDPLTIVWRVKNT
Ga0209010_100001727	F015127	AGGAGG	MKNRKFTALTLLMFAIAFACLANPGLAQQSPAAAPINLVAGVGGPVSTSSEWSNYSALNLVAGAFIFPAVASVKTTVFYIGFTAGTEADIGNMVLYTTKRGNSKITAVTPVKLKGVSDPIITLTSKKVCPTQPISTSNPCVIRMDPIALTPSTLSDYYFVMYFANDSNNAEVGAANSQYPITSLTGWYESGDQTQLKAGDAIPAGYSGSHPYFLLYVMSD
Ga0209010_100001732	F001474	GAGG	VKRLVVAMAAFVGLGILSWTTLSDSRVRLATLAILAMFALKTWVRREDVLHPDKE
Ga0209010_100001766	F000219	N/A	MGFSRVQIAIAVGAGVLVLMIFFGYLMWLNGQGPVLSRSEDRDPLSGTPNSIDLNPLRDRTTERLATKYLDAMRDGHCQEQLADWEKDYRKKYAAFICSSEAQHPLVSWKVVDWEDAPPLRILHYRGKRLNAPGQSGTYKELFSVTLENKDSGWVVTKYDAMY
Ga0209010_100001786	F008970	AGGA	MFSQPTSPGSSEEKNLESASTSDVPELNLLLPEGWNRPLRKRLLDDLRDVISPEKLPPLHLTSRPVDVGMLAGDILSLPWYRTVFTNIGDVISPETLPPLQLESRPVDVGELIGDQMSHMWWTSLLRSLADAAAPERLPALQLTSAPMDDPSLTQGAMQLPRWSSVISTPKVFYPDKPKAAFVQAPRVAAPPPKPDPAEVEFVHVLEADLKRDLRRSVFRQRLWVSLAVLEVLALIGTSIWWK