Scaffold Ga0209010

Basic Information
Taxon OID	3300027370 Open in IMG/M
Scaffold ID	Ga0209010_1000012 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027370 Open in IMG/M

Scaffold ID

Ga0209010_1000012 Open in IMG/M

Source Dataset Name

Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	166390
Total Scaffold Genes	136 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	111 (81.62%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

166390

Total Scaffold Genes

136 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

111 (81.62%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location Name	Thunder Bay, Ontario, Canada
Coordinates	Lat. (^o)	49.08	Long. (^o)	-89.38	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Thunder Bay, Ontario, Canada

Coordinates

Lat. (^o)

49.08

Long. (^o)

-89.38

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006071	Metagenome / Metatranscriptome	382	Y
F017551	Metagenome / Metatranscriptome	240	Y
F018037	Metagenome / Metatranscriptome	237	Y
F021583	Metagenome / Metatranscriptome	218	Y
F022969	Metagenome / Metatranscriptome	212	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209010_1000012113	F022969	GGCGG	MKNVYEVLRVKEMHLARLRTEVDALRVVVPLLADHVEVGDGRVVDQPDLLWTPSLQKNKWPLKVGNPVPSYLES
Ga0209010_1000012119	F017551	AGGA	MSSKTATWIIAAGALLMFIGLCFLPGAFGEHPEADMLEFGACQFSLGALVIAAGIYAKARVLQIAIASGEPRKESASSNQRVRGGCDLCGTEAPAVQCKVHQLHLCGSCLAQHYDVRSCAYVPTTRTSTNKTGRNAAAHARGA
Ga0209010_10000123	F021583	GGAG	MQTLMTFVTVTAGMAFSLAVAILVEEWIFGKVFGLFFSQQAVRVKSGNER
Ga0209010_100001255	F018037	N/A	MIRKASICEITILVVVICTSLLSSAVGVAEETASASTNAPTAVFPLTTKSPEALRLVQQALDLYLDQVEQAQAIDILRKAVRVDPDFAMGHEFLAQISLDSAEQVGEQEKAFATRNHATNSEQLVIEWYQDAADHKLISAIPKMNDVLNQYPHDKWVVWMTTWWLFNQSQFERASAIYERSGITDSPGLINNMGYNYAAMRQFDKAFAMMDKYVALLPNDSNPQDSYAEILRLAGRFNQSIEHYRASLVINPEFYSSQFGIADTYSLMGNQVQARKEYEVGFQKFTLPELQQILWKTREATTYVREGDYDGAEHAFQTIADYAHTKQNSQAEADTYRQMAMFEQNPKQALVYLGKAEAATQEGKNSLKTAISQELAQILRARVEVALKMGNKQMANSNLERLAAMAESCNDKLSELAYHGAAGEVLFSEHKYDEAISHLEEDNNNPFSLKLLAAAYQKIGYSAGAKRTNDTLTNLNDPTLEQALVVPAFRKCSDTPASCGGNTKSAALKR
Ga0209010_100001260	F006071	GAG	VQRQTPSLALSPSIRYDLALPTIIAPARLLLTLALLLSVFAPSSRAAVANHPPTPVAPAAFSADDFDWREVVPYLFDAAALPGEQGIQAVLENSKVLRAYVANEVRSECSPHKNACAATGDSSTLDKEVSKRIDEIVQEGMVHRHKAAFVDYQLTRQPFPFSEIAAVKSEKNPETYITLSLAGRSYTAADVQAKYGAPYDTDIVQWYSVFKYRLENPRYTSKAVFEIDPVDGAVIKVAVSVKLKKQKNHH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209010_1000012

Overview

Ecosystem & Geography

Associated Families

Sequences