Scaffold Ga0209010_1000011

Overview

Basic Information

• Taxon OID: 3300027370
• Scaffold ID: Ga0209010_1000011
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 170918
• Total Scaffold Genes: 155
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 122 (78.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003400	Metagenome / Metatranscriptome	489	Y
F009041	Metagenome / Metatranscriptome	324	Y
F035870	Metagenome / Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209010_1000011125	F003400	N/A	VRTDILPLCDKHYRTMEFLLAPFSVNYSVEFFRCTEKFCQRCFNESLGYVTPIRDDPPLVSNDQPRCEKHGRPMFISSLDRQRNVLRYLCPEPGCRETTVKG
Ga0209010_100001131	F009041	GAG	MPQSGPSSYKAKLVGRSVIVKVSLFSRAFRGTITATDDTGFAFDSDDVIAALREITGSAMNDMDAPSVYLPFSTLEWLVTSEPKASAASA
Ga0209010_100001134	F035870	AGGAGG	MESKYRVPIFVAVERLQEASQQAGLTEDDVVGLLASGLDICDAVTYVEAVLSNRVH