Scaffold Ga0209010

Basic Information
Taxon OID	3300027370 Open in IMG/M
Scaffold ID	Ga0209010_1000008 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027370 Open in IMG/M

Scaffold ID

Ga0209010_1000008 Open in IMG/M

Source Dataset Name

Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	216636
Total Scaffold Genes	206 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	156 (75.73%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

216636

Total Scaffold Genes

206 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

156 (75.73%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location Name	Thunder Bay, Ontario, Canada
Coordinates	Lat. (^o)	49.08	Long. (^o)	-89.38	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Thunder Bay, Ontario, Canada

Coordinates

Lat. (^o)

49.08

Long. (^o)

-89.38

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011967	Metagenome / Metatranscriptome	285	Y
F012246	Metagenome / Metatranscriptome	282	Y
F024877	Metagenome / Metatranscriptome	204	Y
F034262	Metagenome / Metatranscriptome	175	Y
F085958	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209010_100000843	F024877	GGAGG	MEIEGLEIIRLELKYCERCGGLWMRTWGTEDAYCPACAVEVLDLPIGGRRRKLRLLVNDRVDLKSQGEDWSAVCGEGGNA
Ga0209010_100000845	F034262	AGG	MSKAKSTRVRKRPKRAPSVPKKALKRVDLGVIGERITNLVGNRAIEMVQITIDEVNKGHYLAMKYLFEMIGLCPATAPEGEIQEDSLAKTLLRRLRFPEETDAGNEVTKECVSEPVEQEQESDAVK
Ga0209010_100000848	F011967	GAGG	MNPNDQCNSVSLKEHLLSLIAIERELANRERTFVGLRFELAERALQLDHVEMLRRLELLNHAHEDARQKEASFVGREVYESQVKENNKWRDEVNSALSNRQGKASVTSGLAGAIGGLALSALFGLFMYFAKALLIGFPK
Ga0209010_100000868	F085958	GGAG	MSIAHRIFSAFCLAALFSALSVAQAPSGDANITRLNVDDSLNGWKPVCVLPSCNPGGNGIPTKTSHTIDHVHPSKDGHSMEVSITGPEYSNALWTYVAGADDSATSLSTSLWVYLTDKASVAGSFEFDQFDFSKSEGIEFMWGSQCNQVNGLWQVFDQLHGHWMDTAVKCALKPNQWHHVRWDVHRVSGDTDRCSGKPCMYYDTLMVDGVVHPVNAVYPAGSLPHGWSSAVGFQVQIDIGSTGQPVTVDEYIDLADFWAM
Ga0209010_100000877	F012246	AGGAG	MKLSSNSISKSKTVLAMVLSISLIATGCSAQWISVALADLPVLTQMALNIGTIITTLESGQQISPGEAAAIQNISAQAGKDLNLLATLYNEYKANPSASVLQKIQSAIADINQGLPALLQAAHISDPILSSRLAAGVNLILTTVASFAALIPQTSTQLVAAKVTRSQVTIPKASDLKKQWNQQVCGPTSNSALDFGAAGCTVR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209010_1000008

Overview

Ecosystem & Geography

Associated Families

Sequences