Scaffold Ga0209300_1007501

Overview

Basic Information

• Taxon OID: 3300027365
• Scaffold ID: Ga0209300_1007501
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3224
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007115	Metagenome / Metatranscriptome	357	Y
F015600	Metagenome / Metatranscriptome	253	Y
F090399	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209300_10075013	F090399	GAGG	MNELIEYIRIHLISLHQDLEKIDYVNAYHFYRLKQAEIETSRHILEVAQEILDK
Ga0209300_10075014	F015600	AGGAG	MEHQPDYNVPAHLQRMIDAGVNGLDILHGELKNLMLIAEQELTEIATEEEEGDYSDAMLSMERTRAEGILDTLVSLYTLTYQLSFAIAERESK
Ga0209300_10075019	F007115	GGAGG	VVGCAPPLFLIYWRNMRRHTLATSKEEKVAVSIGKLLSDFTLDLEAVGKYLATANAHILYVRALTVLEATEYNNTVAEYREIGKYYANELRNSM