Scaffold Ga0209300_1006366

Overview

Basic Information

• Taxon OID: 3300027365
• Scaffold ID: Ga0209300_1006366
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3630
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001733	Metagenome / Metatranscriptome	644	Y
F012219	Metagenome / Metatranscriptome	282	Y
F078722	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209300_10063663	F078722	GGA	MGASEWTSIGLAAVTGIISLLAYIIRFLHRMDKRGAVDTAKIEDHGVRIGRLETVTGEMRTSITKLETKR
Ga0209300_10063664	F001733	AGCAGG	MVVLIAFVASFSTVFGDGIRTSEAHDISELGAVLALYGSKAVAAGVSAAVSSVLAFLTMPFKGVQPNSLKVGK
Ga0209300_10063665	F012219	AGGTGG	MNLQNFRIEKEPAPSTDWRVFGDIEDDNGNVLGTFGVDGTSVNIWWVTQDEVFQAGVVQQFAVVMANQIISGAAE