NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209300_1000758

Scaffold Ga0209300_1000758


Overview

Basic Information
Taxon OID3300027365 Open in IMG/M
Scaffold IDGa0209300_1000758 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14549
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (73.68%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001733Metagenome / Metatranscriptome644Y
F007170Metagenome / Metatranscriptome356N
F012219Metagenome / Metatranscriptome282Y
F016153Metagenome249N
F058132Metagenome / Metatranscriptome135N

Sequences

Protein IDFamilyRBSSequence
Ga0209300_100075810F007170AGGMAFEPAVIEQWIYETLTGDATLMGLLAPDNKPNGFQMAIYNTIAPQIDPISRKQPVTPYVVFDRAGSAGQDQDTLCGSRVFTYPTYRITVWDTATGAVSMASSATIMSRIDTLLDNIHVSSTTPRFYVRRESTAQTFGLESGGRTDFGVTAVYRFVTQQ
Ga0209300_100075814F012219AGGTGGMIIQNPSIVKEPAPSTDWRVFGDMYDFDGNLLGTFGPDGTSVNVWWVQQDYDFQLSIVQTFMQVMAQQIVGGTAE
Ga0209300_100075815F001733GGAGGMNSISIKRLVVVVIVAFVAAFTSVFGDGIRTAQAQDVAELGAVMALYGSKAVAAGVSAAVSSVLAFLTMPFKGVQVNSLKVGK
Ga0209300_10007583F016153GGAGMTVADEVYTMERLEEVLKRDHTTFETIELDFSAMWNEQREAYQYQRSIRVSTHNLARMLWFTTCKGQLLSVVYSSGGVDINIGIEQFTQSAPDDWGVRAWIAQMAKELMP
Ga0209300_10007588F058132N/AMALQSLKQIPKDTDKGLLIVDLSDVAGDGAELRFREPKAADLFPDAKELGSLRVAFAEFPEAMLYQIYLLGRCYVADPTDSSEESPLRAFGNLARTSKQTFFRILGEFISWYPTDDLQGRVKEAKNALEV
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