Scaffold Ga0208320_1000041

Overview

Basic Information

• Taxon OID: 3300027362
• Scaffold ID: Ga0208320_1000041
• Source Dataset Name: Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT299 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19734
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (62.16%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.8895
  • Long. (^o): -106.9086
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030919	Metagenome / Metatranscriptome	184	Y
F081905	Metagenome	114	Y
F094821	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208320_100004122	F030919	AGGA	MAAPFPPQGNQTQHTERPLKVYAEQYLEGQPLPVGVVTDYGDPPLFVDGLPRVPLSTGWVVVALTDWVISNRYRGTPIEVISHEEMTERFGTQGDAIT
Ga0208320_100004128	F094821	GGCGG	VFEKIALHGGAASIVWGYRPAVELRTWRIVKSEGKWILSGTIARVDKFQARQAPLLFTAPRPGGFWAWPIETIAIGETSVRAKLGPPVQ
Ga0208320_100004129	F081905	AGGGGG	MAIKTGRYGQVLWDPAATTPVALISLNAWTGDFSIEYEDVTCFLDVNHVYIPGLAKREGTLAGYWDSSNIEIFEAADQETPGMLKLFPNNTETTFFWSGLAYMDASIDCSLAAPKVTGSWRAAGPFPLSGGV