Scaffold Ga0255087

Basic Information
Taxon OID	3300027337 Open in IMG/M
Scaffold ID	Ga0255087_1006748 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Miss_RepA_8d
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027337 Open in IMG/M

Scaffold ID

Ga0255087_1006748 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Miss_RepA_8d

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3046
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

3046

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	46.1812	Long. (^o)	-123.1834	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oregon

Coordinates

Lat. (^o)

46.1812

Long. (^o)

-123.1834

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007855	Metagenome / Metatranscriptome	343	N
F024098	Metagenome	207	Y
F032997	Metagenome / Metatranscriptome	178	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255087_10067481	F032997	N/A	MSVTLIAYPLNDSNTEVPYVLDTMGGTDVAITYSISDIEDVTKRRGSFSKTITLPNTPTNERCFGFAYNIQSFVGGFTPNKKIRAAMWEDGVQVFSGVLQLLSMAKTRGKVTYEVGLFTDDVGLYQAIEGNLLVNTAGVTGMNHTPTSGHVSGTWTASGSASSGYVYGVVDAAGFTDILNVGGGWFQAPWWRLGPSIYVKKMIDLIFTQAG
Ga0255087_10067482	F024098	N/A	MAITVLSGSPQSATPVYNKMLFKVSGSLTSGANYRYVCDVKNAAGTTTLARLKCDKLPTTNYGFFDVSRVVETLIAPQVPTLTQAGFADHAGFYSGYRLAFMEEYGSTPVVQTGTTTNVTGNVTFAGNLEQLELADWSGGVYFPTVFVGNVSKSLATNVRRTVYADSYGWLAQGIGSGYTNPQDIMALVNYFTAGGANTRSYEVLIGTASGSTIFRFGAGPMNIKALTSGQCTDGQAGSYLFPTAEGSYYTIQFYDSAVATIPFTYVIGPCQRFASQPVHFVNKYGGIDSYTFTLKNRKRANVQRDTYGYNTDVYATLTYDKVWAGSFDYVYALNSDWLTDAESEWLIELVRSGQVWLELDGQLVEAVVNANQYQFVTRRNDQLQQLQIEIAVAYKNNIL
Ga0255087_10067485	F007855	N/A	YKAIVKEWNELPALAYKRKFKAGGKWWIPTVFTDELTAGQLIDLMDMNTTDERQLVQNLHRIMATLCREAGFMGWFPKKYDGAGHADRAELLKANAKIGDVWGVVSFFLLSSESYLKILSDYSKHLTKTAQGL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0255087_1006748

Overview

Ecosystem & Geography

Associated Families

Sequences