NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255130_1082510

Scaffold Ga0255130_1082510


Overview

Basic Information
Taxon OID3300027335 Open in IMG/M
Scaffold IDGa0255130_1082510 Open in IMG/M
Source Dataset NameFreshwater microbial communities from St. Lawrence River, New York, United States - Law_Yuk_RepB_8d
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)513
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)45.0061Long. (o)-74.7949Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003291Metagenome / Metatranscriptome495Y
F093862Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0255130_10825101F003291N/ANMNTKEINEKLVSVFTQDELASLMTAMAGYVNTKRKQGRSTGIECVVFNKVCDALLLSNELNAVVIDSKPNPNAPMGSAAYKAYEAMYDSDVRAHS
Ga0255130_10825102F093862N/AMNIMTVKFESELQIKALTKLLSAVYETPVRPRGRHSDRKKVLGGRWRKWSQNDIPWRMAERVTFYKV

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