NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208525_1010954

Scaffold Ga0208525_1010954


Overview

Basic Information
Taxon OID3300027288 Open in IMG/M
Scaffold IDGa0208525_1010954 Open in IMG/M
Source Dataset NameSoil and rhizosphere microbial communities from Laval, Canada - mgHMC (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)994
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Source Dataset Sampling Location
Location NameLaval, Canada
CoordinatesLat. (o)45.54Long. (o)-73.72Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001004Metagenome / Metatranscriptome808Y
F006558Metagenome / Metatranscriptome370Y

Sequences

Protein IDFamilyRBSSequence
Ga0208525_10109542F006558GAGVAIHARMRASLDGLDEGEFTEGHELDRKWQVPKAMVGRRLTQGEAKKLLAKFE
Ga0208525_10109543F001004AGGVTLVTMALIAQIALGVIIGGLTIALLVIGFFVWNSRQRNERLAVGLFIAGAVIVTVLVVVVASH

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