Scaffold Ga0208525_1005015

Overview

Basic Information

• Taxon OID: 3300027288
• Scaffold ID: Ga0208525_1005015
• Source Dataset Name: Soil and rhizosphere microbial communities from Laval, Canada - mgHMC (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1379
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Source Dataset Sampling Location

• Location Name: Laval, Canada
• Coordinates
  • Lat. (^o): 45.54
  • Long. (^o): -73.72

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053444	Metagenome / Metatranscriptome	141	Y
F085984	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208525_10050153	F085984	GGAG	MSRTNSAEIHRFRVKHALQSIEDALTLLDDKPAEGIETSALERVREDLAVVLRTLEPAR
Ga0208525_10050154	F053444	N/A	VQRFAVTIQGPGWEDVQDMELPRAPAEGDSIETRYGTCIVTEFDAAPDAENYTGKIVCRLPG