NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209303_1016121

Scaffold Ga0209303_1016121


Overview

Basic Information
Taxon OID3300027262 Open in IMG/M
Scaffold IDGa0209303_1016121 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Asex1 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2367
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameSidmouth, United Kingdom
CoordinatesLat. (o)50.677Long. (o)-3.24Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F093164Metagenome106Y
F100274Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0209303_10161212F100274N/AMPIALHHHSNMTFHMSQLLHPFYELCRLGEAAGSCDGKPMRKLHTENHCTAQISSLWKVALRPWCGNCPAHSHLGRDQCYASQAVSVFCMSDTNQLSTTGRKNVAIHCVRGERPRRGNVWTMHIFLRDGDIDIILNSAESHQPLDATEVRGTLHHFLESFPSMSTGTEYRFR
Ga0209303_10161213F093164GGAMGTLQLEKRKGRNDNWVRKKEPNAVVVRRAKGMDD
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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