Scaffold Ga0208178_1004633

Overview

Basic Information

• Taxon OID: 3300027259
• Scaffold ID: Ga0208178_1004633
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1568A-3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2511
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2861
  • Long. (^o): -123.7318

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001215	Metagenome	746	Y
F034542	Metagenome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208178_10046331	F001215	N/A	IQLVRVGDLPSEDAALVEDITIVSNEGYPDNSGRRSVDLGLYVYAPNQAAPSTSAALMVGRVEVGLSGSTRGVPQSVQLFACNAPTPQVGDTNLLAPIQVGKSEGLYLEKGYILAVGYIGNGSTAVSGGLSPSGITIWSQGGFY
Ga0208178_10046332	F034542	AGGCGG	VSRRRGSDNFNLRPFKATNPAELPKTVKGSDNTKELNSPLPFKRRFRPALNTKDFSVTSEYDYASLWVRWRRGYELSMYSQQAYGGLTYSFKYFVSGTPGLGVFLPGMCFMYPTTRTDMRMHMVGIRPRDSFNFLNFGYSIVSVTDYDANTYAVRLSSNFGAPISFFTGEVLSNRFRADGTDKEYGFNNYTVTAVGINNVPVNPSYAPIFNTLFLSHGESTSWAVVDENTLAIPATGPPAVGEYLTTEMRSQCTCSDFLARENFNLYDASIRKYPRTRPQNFDPGYYDAGVDGSPRLVDSSDNPGFARTFGFIYINQIYNIPSFSEATYSDPNFFYYQPKWCKHIYAAMWDMQRAYNQGVATGPWLPQPTDEPLNEYYREYFEKELARQTTFLKREKDLVWWQRYSPAKDDMPTHMMYPDMYNMMTKTLNAGDLAALNTLQGRSFEMFTIDEFNPFDPASFVVNTYDGGTYENGVLVNQPTNIFDGGQYLNGVIVPPAGFPSLINGGVY