Scaffold Ga0208680_1001229

Overview

Basic Information

• Taxon OID: 3300027253
• Scaffold ID: Ga0208680_1001229
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1556A-02 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5581
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Tenacibaculum (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2022
  • Long. (^o): -123.941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F063740	Metagenome / Metatranscriptome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208680_10012299	F063740	N/A	YKIMKKLAFTFVLLLSFACSKDDNSTPNNLVDPIIGSWQSSFALTDENEAGQVVDISANGIIIFNADGTGSRNLLVTNDGGEPQESNETFEWENLSSALNFSETTQNYAINGDAFTAVFTSNFSSLVLSEDGGDLQISMTRN