NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208679_1063627

Scaffold Ga0208679_1063627


Overview

Basic Information
Taxon OID3300027247 Open in IMG/M
Scaffold IDGa0208679_1063627 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - metaG 1555A-02 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)672
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.2024Long. (o)-123.9409Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035667Metagenome171N
F068567Metagenome124N

Sequences

Protein IDFamilyRBSSequence
Ga0208679_10636271F068567N/AMAKFKFESVKFEQIMKDYATIREVTIPDAVMLNARLLCVELARRTQPFGDKQESGTIRVKNDIGKIIKNTEQLDEYADRVGSQRIKARLKALIKSGKFDIVETILRNIGFLNKWTGMEVISGSKMKSVHNQARNKTTGRTKSRGSKLFIASDSDHATYIEEVQKRVGISKGGWADCATQLKKV
Ga0208679_10636272F035667N/AAGLQLLQADDYTNGIHRPWSRNNASVDVDALATIEDTLAKYGKIQVRECEV
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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