Scaffold Ga0208172_1008508

Overview

Basic Information

• Taxon OID: 3300027231
• Scaffold ID: Ga0208172_1008508
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1552A-02 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2107
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.1869
  • Long. (^o): -123.8842

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000868	Metagenome / Metatranscriptome	853	Y
F088889	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208172_10085081	F000868	N/A	YRKGGSMSFLENENQMVIDAIYSEIGEQLVEDWVNSNLDEGQMYADYRFAEMSSDNYIKGRFNQFYDLNPDDQYYLEWDEEK
Ga0208172_10085089	F088889	AGGCGG	MKTPEQKVAEQLVNLTEDHWFNAASLARYITDQPYYTTDRIMELVAQIIKWGGRRHEDELTPSG