Scaffold Ga0208025_1006591

Overview

Basic Information

• Taxon OID: 3300027225
• Scaffold ID: Ga0208025_1006591
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1549A-3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2209
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Alteromonas/Salinimonas group → Alteromonas → Alteromonas australica (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2322
  • Long. (^o): -123.8817

Associated Families

Family	Category	Number of Sequences	3D Structure?
F081084	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208025_10065912	F081084	AGGA	VAPRPSSMTQAARIRELIEAAGSHFVSVHFIKADGELRQLTFNPRHIGEIKGTGHALKDPAAIENIVRCMDIAKGWRSFDCRRVCKLTVNGKTFEFDLVTEA