Scaffold Ga0208306_1000747

Overview

Basic Information

• Taxon OID: 3300027214
• Scaffold ID: Ga0208306_1000747
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1449A-02 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7331
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2327
  • Long. (^o): -123.9168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041754	Metagenome	159	N
F048782	Metagenome	147	N
F067729	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208306_10007471	F067729	N/A	MKKLQKEFIGNFDRVGNTKFIQLKKENGVAIYERQNMDGSFRSYEVFVVKVIEKGTALPGGNSVKETYEQYPGCAAFGKTAYDCKTIVSAEERFDELVKKVKCSNDAKEESIKTGVPVKRGRKASVKMNVKMTLKKD
Ga0208306_10007475	F048782	GGA	MGIIDVTDRYPVTGLHWKLNVVGQEGNEFGLGEYMQCVMVNRPSKEIDVTKVDVSVIEHALKVKGVNRYYVRNSMSRSLFSLFGGFAVDDDVYDDVWRMYNRDPWNRRFPKFVDGSVEDMYINSSYAARVSYGFWVYYRDRVISGDISDDTNYGVRYISEVPVLILHTTTIEGVTVACLDVVNANKI
Ga0208306_10007479	F041754	AGGA	MNHMKLNKILEKYHQTNNEWGLHTYNFGKSTSLGKRIGWMYNELMMNGRIDVIHNDILSSINELDSVTEYFIRNVITRDNFVGDDVYDRLKPYNADPWNREFLVYYGNVIHPEYYSVKNRDGWDKVFISVYYNNMVAKYSGMHITNESKVPLMILYSTSVNGLNINCL