Scaffold Ga0208926_1001218

Overview

Basic Information

• Taxon OID: 3300027205
• Scaffold ID: Ga0208926_1001218
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3893
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2327
  • Long. (^o): -123.9168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008546	Metagenome / Metatranscriptome	331	Y
F072337	Metagenome / Metatranscriptome	121	N
F074877	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208926_10012183	F072337	GAG	MKKYRVWLEDSVEPDGGSWWNCYLGKDGKLHDYIYTDEQADTLEWYIEHEYIVEEV
Ga0208926_10012185	F008546	N/A	MKEVKWWKLLIVFFSALVLEANSIAGFRFLMDEHWMGMVMMAGINPFLCLPMNHYTIEVKTFKGRAIIATAFSTGFIIGILTIRPFFI
Ga0208926_10012188	F074877	N/A	MTTEQMKATILLYSIELRDEYNEMVGAFGHTDPAAQRLQTKYVTVLVLIEKLGLDENY