Basic Information | |
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Taxon OID | 3300027205 Open in IMG/M |
Scaffold ID | Ga0208926_1000259 Open in IMG/M |
Source Dataset Name | Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 10094 |
Total Scaffold Genes | 22 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (63.64%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
Source Dataset Sampling Location | ||||||||
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Location Name | Columbia River Estuary, USA | |||||||
Coordinates | Lat. (o) | 46.2327 | Long. (o) | -123.9168 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F015082 | Metagenome / Metatranscriptome | 257 | Y |
F021761 | Metagenome / Metatranscriptome | 217 | Y |
F041026 | Metagenome / Metatranscriptome | 160 | Y |
F094945 | Metagenome / Metatranscriptome | 105 | N |
F106141 | Metagenome / Metatranscriptome | 100 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208926_100025910 | F106141 | AGGTGG | MTKTRAVFFQKGENRIVIWTNHTRWTVTDMVAGGTKQYTKQLAMALSASLMAEGYEATVH |
Ga0208926_100025914 | F094945 | GGA | MKPAIERGEKCYNARLTEEQVRLARIYVMQGPVGVLPQLARKWGVGTQTLRNAVIYKNWKHIPPPTAEEIAATPLPSWVETVGRGTERAHCGRCVHWDHNRGCTMGIPESGNGGFFAASCAAYAVTSLAD |
Ga0208926_100025918 | F041026 | N/A | MTNIFRTIALELGRTLLKLAVDRALRKELPAIFAKLDIELPSMLIDHAKPLEVQAVVTDIIEENIKHTATATQVSAILGLYDPVRAAIRNLKR |
Ga0208926_10002593 | F021761 | AGG | MITNPWVNRITALVVLAAIYAAGYAGGRDQATLAHHNHPACNTNLKP |
Ga0208926_10002594 | F015082 | N/A | MSESDIYWTFVTASKYAGSFYQAMGNAGLAADPNNKRRILAAFPEMVATYGAASRLHQTMRAGVAA |
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