Scaffold Ga0208926_1000259

Overview

Basic Information

• Taxon OID: 3300027205
• Scaffold ID: Ga0208926_1000259
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10094
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (63.64%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2327
  • Long. (^o): -123.9168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015082	Metagenome / Metatranscriptome	257	Y
F021761	Metagenome / Metatranscriptome	217	Y
F041026	Metagenome / Metatranscriptome	160	Y
F094945	Metagenome / Metatranscriptome	105	N
F106141	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208926_100025910	F106141	AGGTGG	MTKTRAVFFQKGENRIVIWTNHTRWTVTDMVAGGTKQYTKQLAMALSASLMAEGYEATVH
Ga0208926_100025914	F094945	GGA	MKPAIERGEKCYNARLTEEQVRLARIYVMQGPVGVLPQLARKWGVGTQTLRNAVIYKNWKHIPPPTAEEIAATPLPSWVETVGRGTERAHCGRCVHWDHNRGCTMGIPESGNGGFFAASCAAYAVTSLAD
Ga0208926_100025918	F041026	N/A	MTNIFRTIALELGRTLLKLAVDRALRKELPAIFAKLDIELPSMLIDHAKPLEVQAVVTDIIEENIKHTATATQVSAILGLYDPVRAAIRNLKR
Ga0208926_10002593	F021761	AGG	MITNPWVNRITALVVLAAIYAAGYAGGRDQATLAHHNHPACNTNLKP
Ga0208926_10002594	F015082	N/A	MSESDIYWTFVTASKYAGSFYQAMGNAGLAADPNNKRRILAAFPEMVATYGAASRLHQTMRAGVAA