Scaffold Ga0207948_1000418

Overview

Basic Information

• Taxon OID: 3300027174
• Scaffold ID: Ga0207948_1000418
• Source Dataset Name: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF040 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3998
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Sampling Location

• Location Name: Harvard Forest LTER, Petersham, MA, USA
• Coordinates
  • Lat. (^o): 42.550409
  • Long. (^o): -72.180244
  • Depth (m): 0 to .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000083	Metagenome / Metatranscriptome	2471	Y
F006272	Metagenome / Metatranscriptome	377	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207948_10004183	F000083	AGG	MSTLDEITKEKQRVSETLARVDAQREKLTGQLSELEATERVLTRYSKGTHVKKTASAKTPTPPTKAVAPVRSRGRTRPPAAKAVVGKRNSPSLSDQVLALASGKTQQEIAAACKGVRPNHVGAAIARHKRAGRIEERDGKLYAAQPTGTEQRAAV
Ga0207948_10004184	F006272	GGAG	VLAAELRDTERAITFWRQKASECGGLPPSTAFELSRMSSGAWSHRFVICAAAVVNELAFLIYGSRFAKLLELPERPTRGIPITRQLPGRYLTLFTEGCRHAIAQGAPVRLSGVVVDYGQIELYRAAFMPLAMQLTSSKQLVFGTFNRRIGPKASSSDAIRTTY