Scaffold Ga0208963_1005099

Overview

Basic Information

• Taxon OID: 3300027170
• Scaffold ID: Ga0208963_1005099
• Source Dataset Name: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C43A7_35 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2754
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: Monterey Bay, California, USA
• Coordinates
  • Lat. (^o): 36.25
  • Long. (^o): -122.2099

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000126	Metagenome / Metatranscriptome	2021	Y
F005947	Metagenome / Metatranscriptome	385	Y
F029277	Metagenome / Metatranscriptome	189	Y
F098227	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208963_10050991	F029277	N/A	MWKNIDKVRAHREALKHAWFNFDHSNTPEVKQIIVDYNNNPFWEGYGEVKILRDGPNGYCSFSSHEENPFLYVSERKEFLSGEYELIVHYETRVK
Ga0208963_10050993	F098227	N/A	MYEALEHWKQYKQKQVAKAEIDKLINKLITKNGTTEY
Ga0208963_10050994	F000126	N/A	MVQQNINMRNYSITRKKGEWYHAKVTDSYGNNYDNYFETASEANDWIYHVWDKEEWFNSVNSQELLANAIAECVKIDEEAGREPALD
Ga0208963_10050999	F005947	AGTAG	MSNKTFWSDEAHIHFHRNKGKVIGGYYFRAFDLVKFMKLVEKEEGEVVGLEFDGNNVNIIIKADEEV