Scaffold Ga0255108_1030327

Overview

Basic Information

• Taxon OID: 3300027149
• Scaffold ID: Ga0255108_1030327
• Source Dataset Name: Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Miss_RepA_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1072
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 45.0061
  • Long. (^o): -74.7949
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F078705	Metagenome	116	N
F103253	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255108_10303271	F078705	N/A	YIAVDALANVDDTKLSYLIFPFDEDLLEAIEENLREISIDKEVTFSIQDVLLSRGEFHYVRKKVTMTEISNHRFCIAKNTDSIPKLQNSKLHVTNDYFYFSGFGKQNGTKGSPIVKFVSENFNLVTIDKLKKYVKSKKDMVE
Ga0255108_10303272	F103253	N/A	MEEKVWIYLSKTGTGFELKGSDIISAFDAFINADGSYLIEHSYSDIKGDEHFFIYEWDKSQKKRRTIFEGYQRQNILTGFAKNVDIPENLKKSISENYTFDEEDLELEKNANS