NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255064_1015403

Scaffold Ga0255064_1015403


Overview

Basic Information
Taxon OID3300027138 Open in IMG/M
Scaffold IDGa0255064_1015403 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepB_0h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1332
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)46.1812Long. (o)-123.1834Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009126Metagenome / Metatranscriptome322N
F009807Metagenome312N

Sequences

Protein IDFamilyRBSSequence
Ga0255064_10154031F009126N/AMAITVLSGSPQSATPVYNKMLFKVSGSLTSGANYRYVCDVKNAAGTTTLARLKCDKLPTTNYGFFDVSRVVETLIAPQVPTLTQAGFADHAGFYSGYRLAFMEEYGSTPVVQTGTTTNVTGNVTFAGNLEQLELADWSGGVYFPTVFVGNVSK
Ga0255064_10154033F009807N/ALENFERLFQAPNEDGAGPVTNPLAGYGWLMVVWRMANKDVLKFDAIFAMKAVEFLNYAMLIHDILEAERQEAERMRRR
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