Scaffold Ga0255070_1011401

Overview

Basic Information

• Taxon OID: 3300027133
• Scaffold ID: Ga0255070_1011401
• Source Dataset Name: Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Miss_RepB_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1553
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 46.1812
  • Long. (^o): -123.1834
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000141	Metagenome / Metatranscriptome	1941	Y
F019825	Metagenome / Metatranscriptome	227	N
F096866	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255070_10114011	F096866	N/A	GEVVDVSFTCRHGDMVKKEGVAKTGKAYAGYVCTAQKPDQCDAKWARLTAAGTWFWPDNAEEGKGGE
Ga0255070_10114012	F019825	AGGGGG	MGYVEILRGGPYLERIENDQVKFVPSTDVCVACNDDRLIHSGNFWILP
Ga0255070_10114013	F000141	GGA	MMHPQFKCNGCKRKTEFLWLDQLDMPDGFKAYQCMDCGCVGVKNIAEALDVPDSDISRCDKCGSWKFITVVCHTCQLIGAK