Scaffold Ga0255071_1007172

Overview

Basic Information

• Taxon OID: 3300027127
• Scaffold ID: Ga0255071_1007172
• Source Dataset Name: Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Miss_RepC_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1903
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 46.1812
  • Long. (^o): -123.1834
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002227	Metagenome	580	Y
F028148	Metagenome	192	Y
F102590	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255071_10071721	F002227	N/A	MKLTIQSKTNAQTIVDLFNAIINGEIEEHQATPLSIYDEEKHICSIVAANGEQILELIIEREEGDKIIQQ
Ga0255071_10071724	F102590	N/A	MKTHTPGPWRTTGLNVRAGDALICYAMNHHANAETSEPEKLANARLISLAPQMLLALERLAHPMADDEDLDYAREVIKKAKGQL
Ga0255071_10071725	F028148	N/A	MKTIHEIVREIQFFDPAVRAFDAHDLPQSVRAYLHHNYRMDARLTDEEQQLIEVSFEPFADNLREAFQDNPRPDATRFYLFDDLSLYVKTNAGPELWADAQVFVVERILPAMRLTRMEADLMREIGMDEQVSEVRDDFFAAFAHILHRDCGIPHCDAREHWNAYARQLGDGEREEAELGGSESGRAEGIRFASEYAVTNA