Scaffold Ga0255090_1000164

Overview

Basic Information

• Taxon OID: 3300027123
• Scaffold ID: Ga0255090_1000164
• Source Dataset Name: Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepA_8d
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22884
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (12.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 46.1812
  • Long. (^o): -123.1834
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012669	Metagenome / Metatranscriptome	278	Y
F015718	Metagenome / Metatranscriptome	252	Y
F026559	Metagenome / Metatranscriptome	197	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255090_100016423	F026559	N/A	MKYQIIERFAWYFPDNDIEVSVYRKQSYFRRFIMWLFFDAELRTYYKTLDTFQVKKG
Ga0255090_100016430	F012669	N/A	MSEQIYMNLKDAVKRPKLDFKNINRENKQFKRLVDNYQRWNEDEGADEPRSTYEDDIIECLGHYDLDGYQLAEYLHDYKYVEPNTELVDILDDALFVKSSLEREMFEQWVKENFLTIPDDVIGKMVNAKQNLRKYENHYITGIRPETYQVTVSEDATKQDGWIVGFENVTIL
Ga0255090_10001647	F015718	N/A	MIGKEINERYPVTNGMWRYMDNMTLGEYLASLGVDNKSYGFIKGYPRSFYLRVGLYEPGYVITTNSHLYDSLVTVRDNDPWHRKFKVFPVGSNLYGNDVYYYFSLMAKGLSSYGNDIYNCYVHVTTVNGKSVYCVDVLN