Scaffold Ga0255074

Basic Information
Taxon OID	3300027121 Open in IMG/M
Scaffold ID	Ga0255074_1000481 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepC_8h
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027121 Open in IMG/M

Scaffold ID

Ga0255074_1000481 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepC_8h

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6053
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (31.58%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

6053

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (31.58%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	46.1812	Long. (^o)	-123.1834	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oregon

Coordinates

Lat. (^o)

46.1812

Long. (^o)

-123.1834

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000785	Metagenome / Metatranscriptome	891	Y
F017485	Metagenome	240	Y
F027416	Metagenome	194	N
F038092	Metagenome	166	Y
F054034	Metagenome	140	N
F055733	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255074_100048110	F027416	AGG	MLTIENIQKLKGCKVGANGMVWKILRTKEFDYNSENIYSIVLRTYPDNIHRIHLYLDRELKDGDYHISSSEGNIKKAVERQDMVDVYNFLRLIKKEIERALC
Ga0255074_100048114	F038092	N/A	MPIIPTPPPMTLRQKIQTLQGINNMTPQNNVVQQIRDIAEEQAKIALAELMKQETEKRKQTILTIENIDKIKGHKYSEWLTVGGVKEWDDHYEFTLLDEKGSQVETILLHRRQTSDKRYIMEYNNQTLWITKDRLSTIDGIIECMREI
Ga0255074_100048118	F055733	N/A	MAPIIYMIQTMVWIAHNDRKIADNISKKMTRVGEANGLKYIVIEN
Ga0255074_10004812	F000785	N/A	MRVTNKRGMKFDCNRLKNWAEEKLGPSKCTSIAFTWDIEEESLGWYDWEKTIWINLAHCKRMISVQKTLLHEWTHAQQTFRWYNHYQLTYGYKNNPYEIEARENEKLVKRAYRKSK
Ga0255074_10004818	F017485	N/A	MNNELKTKDILEGITFILMIVATIGMFCLLYEVKELRELTKGASNFRTIRK
Ga0255074_10004819	F054034	AGG	MLTIRTFKKLEGLVLMDGLNVESIFEFNERYSIWLSDGTNIEIDREPHWKSSTVTYYKMYIAGGTTAMTEFIMIGTINTLDRMAKHLIYIHDKYKTK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0255074_1000481

Overview

Ecosystem & Geography

Associated Families

Sequences