NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209732_1078139

Scaffold Ga0209732_1078139


Overview

Basic Information
Taxon OID3300027117 Open in IMG/M
Scaffold IDGa0209732_1078139 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)577
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005919Metagenome / Metatranscriptome386Y
F011040Metagenome / Metatranscriptome296Y

Sequences

Protein IDFamilyRBSSequence
Ga0209732_10781391F011040AGTAGGMRGVQMLVYEDNFGFWDIGNPEERIFFDHVQRQSVLIACERCERPVRLIPPKALCASCVSALEYGAPASMKEYGSQETLLDSARPS
Ga0209732_10781392F005919N/AMAVRKRFWTLLARREGRFLPEFGSFARGDVIAKMSELRRKGIPRSDLKIIASDPDLAAITKDVEALNDA

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