Basic Information | |
---|---|
Taxon OID | 3300027117 Open in IMG/M |
Scaffold ID | Ga0209732_1003936 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O1 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 2444 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Algoma, Ontario, Canada | |||||||
Coordinates | Lat. (o) | 46.42 | Long. (o) | -83.37 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F025333 | Metagenome / Metatranscriptome | 202 | Y |
F063887 | Metagenome / Metatranscriptome | 129 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209732_10039362 | F025333 | AGG | MIDAEVLRLRKLRNVALRVRALARILDSDSVQEQSAFARSAVICWTIARVASGRLRAHPYLSYQQGPSQLRDLADGVIASLGAFNARRRNRRSSVCAQQLQTVAREVDDVRALTWSPELSDALGRVQIQMRRLANELDLGALAETGGMMPRVKVVSGADNGNSLDEIAVDNSWPYLAI |
Ga0209732_10039364 | F063887 | N/A | MEKKPAIAIEIALQTHVLKTCPTHRQVYFDDDADTASAFALAIELVRKHKLYVDEFHDDEHELMDLLSDTLGATPVSCPECQSAGVLGSARDRSGFLESALEIR |
⦗Top⦘ |