Scaffold Ga0208009_1023925

Overview

Basic Information

• Taxon OID: 3300027114
• Scaffold ID: Ga0208009_1023925
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1337
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008494	Metagenome / Metatranscriptome	332	N
F070110	Metagenome	123	N
F103250	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208009_10239251	F070110	GAG	MGGFYLPITPMFLDDFPIVIWFVRKSRNSYLLFDSANQLVMRRDEKRKKEIYQYCAENGI
Ga0208009_10239253	F103250	AGGA	MQKIEIKTQYGWSTAKIGRYTNGHLGIQLFQDGSPLVKISTNLPDTKIDTREFHFNSNDAGTLKDDVLNSGHFEDTGKSDKSGFCEYPVFRLKDHVDVVEG
Ga0208009_10239254	F008494	N/A	LALYTLDDIISHQTKEFKMNKQDAITSFMKAVKTYTTSIDKTAQANISYKKAVYALEDAVNQIYRDVDVKELGSNAEQRNAKISAQTSELILAKRELEYQLEVARAEETRAKTECDQIKYIIRALEVKEEA