Basic Information | |
---|---|
Taxon OID | 3300027114 Open in IMG/M |
Scaffold ID | Ga0208009_1012833 Open in IMG/M |
Source Dataset Name | Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 2011 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Ohio | |||||||
Coordinates | Lat. (o) | 40.178 | Long. (o) | -81.073 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000403 | Metagenome / Metatranscriptome | 1177 | Y |
F000903 | Metagenome / Metatranscriptome | 843 | Y |
F012452 | Metagenome | 280 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0208009_10128332 | F000903 | GAG | MITRIEEIQCIISAVEHCKDRNADHATRWHKTPSWFEYVAQMAESMAAEWIVAKRLGYEYKPGTTWDKSKADVGEHIEVKWSANPDSNLWIQDSDRHDRDIAVLVVGQTPKMHIVGWMPVAVAKKPRYRNASQNNWSVPQINLQPIETLMRSNYAHPAI |
Ga0208009_10128333 | F000403 | GGAG | MSDYVEIIYPQEMMAKLMCNGEIVEEYKIEQCDKCSQLRKLDKFGYQKGYDSKDNIIWFCGECR |
Ga0208009_10128335 | F012452 | AGAAGG | MAGFLENYEGNKERTDRWIKTFPQGRLEAHIIEFNAEKGYVLVQAKAWRNQEETEPAGIDYAFGYREAFNPNMKRWFCEDTTTSALMRVMALVMGGTEKATKETMEQVKVNDATKPQDYDYWTTKFGDVPSYKTADQAEQSGIPSLGSSMDEIAKQLGGELVQEAPQCSHGHRIWKQSHDGAPKSWGGYFCTERTKATQCTPLWYVLRSTGKWEPQV |
⦗Top⦘ |