Scaffold Ga0208009_1004826

Overview

Basic Information

• Taxon OID: 3300027114
• Scaffold ID: Ga0208009_1004826
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3574
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027846	Metagenome / Metatranscriptome	193	N
F060861	Metagenome / Metatranscriptome	132	N
F071234	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208009_10048262	F071234	AGGAG	MGDMEIIDMHGVKATFTDNGVQVEIVQWADRCLACNDPRLLRDGTYKICVTCGCRQ
Ga0208009_10048263	F060861	GGA	MKPDLSQYEDAATLNKWFINNYPMGRIELSIVEINLDKGIVIFKGSVWRDSNDAAPAVTNFAKGERDEYPTHMRKWYLEDTATSCIARCLILIKGSNKTAPKESMIAATTWSIEPKPELERSFVEVATAPVKTVEVDNLTELHCAGGSRMLYKSGISKTTNKEFAGYVCVCGNKCQPVWGSQRADGTWFFKETVNG
Ga0208009_10048265	F027846	AGG	LVIVKYDKISGAYVDDTRKHFVKASLIRNYAHKSMGATQVRGRLSAAMVEGYWLDKFKEAVKYEL