Scaffold Ga0208365_1001612

Overview

Basic Information

• Taxon OID: 3300027070
• Scaffold ID: Ga0208365_1001612
• Source Dataset Name: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF004 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2480
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Sampling Location

• Location Name: Harvard Forest LTER, Petersham, MA, USA
• Coordinates
  • Lat. (^o): 42.532967
  • Long. (^o): -72.180244

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005643	Metagenome / Metatranscriptome	394	Y
F077636	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208365_10016123	F077636	N/A	MLNNAFPPYVGDRMQAHDFDAPNLDTVLEPRGRSRLFLEDDPPISVEDGPPTSVEYDASMPSVTKWTPSASAVFVFLFLVLAGVGGALAWRYYDGQATDMIGAPALPGATNKPTAPPEGFAELQQQLKSIATDLAAVRNTLEQQSAANHDQLTRIKERIPNKASPCFHLLP
Ga0208365_10016126	F005643	GGA	MCVVGANTNEEVKHGSITLMGTAAVALTATTLLSVPASADRICRQVCDEGFCRSRCVERGDRLYMYDRDRDYYHHRRPGVEFRGPGFDVDVGR