Scaffold Ga0209898

Basic Information
Taxon OID	3300027068 Open in IMG/M
Scaffold ID	Ga0209898_1000303 Open in IMG/M
Source Dataset Name	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_50_60 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027068 Open in IMG/M

Scaffold ID

Ga0209898_1000303 Open in IMG/M

Source Dataset Name

Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_50_60 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5215
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

5215

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location
Location Name	USA: Columbia River, Washington
Coordinates	Lat. (^o)	46.372	Long. (^o)	-119.272	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Columbia River, Washington

Coordinates

Lat. (^o)

46.372

Long. (^o)

-119.272

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F003152	Metagenome / Metatranscriptome	504	Y
F009676	Metagenome / Metatranscriptome	314	N
F104901	Metagenome	100	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209898_10003032	F104901	GGTGG	VPRVVIVGDHNSGKTTFLGLLYAAQVKFGSDKADGFRFHAAFESLDEISGVFQRLMSGSFPDAATKEGVREIAFRLSYRRTGLGILSRRRLRGSSPDASAPFQLILLKSFEADMARSRDEGSVAHGTLSSALTSDAIVIMVDATSLAVADEEGELAPLGKYDEAVEALLMAIKRSRDQAEGKLLYPIFVFSKFDRVDPEVLRRANLNAAPPDVSKKGPHAEYAKRLVDRSMPKTVAIIQSGGRRGLRFATPSYFFSWVRSDEPVPGRDQRIRLRRSGAIGWEPDYPSDEYLAFLECLGRIAADTTA
Ga0209898_10003033	F009676	AGGA	LIAGLHRDMPCALLGDRASGKTTFLGLLYAAQVKYGTGVTDDFRFHAPIQSLNVMSAVYEGMKDGRFPSATLKEEITELGFIFGYLRKVVGKLPYYIRQQNWVRPFSTLRFSAYDVSGEDIEEFIETGIASRPLIQQLLKSIVVAVLVDCSKMTTEIDTPAYKKMLRYDSTVAKLLVSFQTYKKQEYDRLKDSGVRAESPKIYPVFVMSKFDTLRDDVLARLGLHRGFPENNRARKEYAEALLRVFVPQTLSQIRGGKVAGVSMDKSAYFLSWVRTETQEGMDPVGQSRIVRTGFAPEGGGEPDFSYDEYVNFIEHFREIAHKIPDEVLEAERFQAQVMARSA
Ga0209898_10003034	F003152	AGTAGG	MPPAESDRGATDGDIVEFDHWIYGVVAGVGYTTKAVSHGLDAGLYDPYLRGHYTPIRAAAAQTAEDEVDLHMIHPLRTGRELLLSRISRGTPDEAGRPTFTNHTVIARTDVLRSGQITLEAVYRSMKEFDRESADLRAEVPLLKVPTRPDAEGRSRFGNGIHKHLTFPAVETLATRIMTDPNSRTLLLCRNTTAEARKATLNLVYELLAWGCGLPLMTAISEAPRSSALNFFNLVVAPRGVRADSTWAILESALSESVLPRVLDRDEVYQVLTSTVRQSADLPLAR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209898_1000303

Overview

Ecosystem & Geography

Associated Families

Sequences