NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207806_1014734

Scaffold Ga0207806_1014734


Overview

Basic Information
Taxon OID3300027049 Open in IMG/M
Scaffold IDGa0207806_1014734 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 72 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)927
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NameLuquillo Experimental Forest Soil, Puerto Rico
CoordinatesLat. (o)18.0Long. (o)-65.0Alt. (m)Depth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000859Metagenome / Metatranscriptome858Y
F023802Metagenome / Metatranscriptome208Y

Sequences

Protein IDFamilyRBSSequence
Ga0207806_10147341F023802GGAGGVNTYLQGRKITAAQDYERPSVEALHLIRKLRWIGMEEEAERVETQLHETTLAGGII
Ga0207806_10147342F000859GGAGMPTEEIRSNRSTSPTGSEFFNALQEMSRDWMGRATAEVELGLKLSKKLTAAHSVPDAITAYQEWLSEEMNARAEDARLLMSNGQKVMDASSRLLSSSWTSGRMST

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