Scaffold Ga0209295_1005345

Overview

Basic Information

• Taxon OID: 3300027028
• Scaffold ID: Ga0209295_1005345
• Source Dataset Name: Marine algal microbial communities from Porto, Portugal - Porto_5 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4356
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location

• Location Name: Portugal: Porto
• Coordinates
  • Lat. (^o): 41.162
  • Long. (^o): -8.622
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022581	Metagenome	213	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209295_10053455	F022581	GGA	LPSSAPPAPYRMLHEQRFFFLASKAIVFAVSCVYGWSLFTCYLTNIIKPTFGGAAGDTLACRMHLHAVPESCLLFPSGTVAGIAPTGLTRRARLPLVCSTTLGIVGGDFQSERGALLLAL