Scaffold Ga0209884_1000025

Overview

Basic Information

• Taxon OID: 3300027013
• Scaffold ID: Ga0209884_1000025
• Source Dataset Name: Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_30_40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22843
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (46.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location

• Location Name: USA: Columbia River, Washington
• Coordinates
  • Lat. (^o): 46.372
  • Long. (^o): -119.272

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013020	Metagenome / Metatranscriptome	275	N
F099530	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209884_10000254	F099530	GAG	MSDNNEGRREDKNRKMSLEEDKSILEERIDLFEKSLANTGIGLKLTREEIIHIIKSNPAEFLKLLMEMERFSQEMIKRGRGITR
Ga0209884_10000259	F013020	N/A	MSTDNNNNIKKQEQLKLDALNKLFGWIKDKDTKAVMVNKYYINKEHRAALKAFLDDMVKALDESTAETNSKEEIKRQLSYIIREIDPLY