Scaffold Ga0207854_1030780

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207854_1030780

Scaffold Ga0207854_1030780

Overview

Basic Information
Taxon OID	3300026982 Open in IMG/M
Scaffold ID	Ga0207854_1030780 Open in IMG/M
Source Dataset Name	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 7 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	676
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location Name	Luquillo Experimental Forest Soil, Puerto Rico
Coordinates	Lat. (^o)	18.0	Long. (^o)	-65.0	Alt. (m)		Depth (m)	.1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F043306	Metagenome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207854_10307802	F043306	AGGAG	MTNSQSIAVTTVFSIGLAFVPAAWADPASDACAALVDSRGTLYSMLNAKDKAAQDA

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