Scaffold Ga0209850_1004831

Overview

Basic Information

• Taxon OID: 3300026931
• Scaffold ID: Ga0209850_1004831
• Source Dataset Name: Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T2_23-Sept-14 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1165
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Unclassified → Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location

• Location Name: USA: Columbia River, Washington
• Coordinates
  • Lat. (^o): 46.372
  • Long. (^o): -119.272

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003299	Metagenome / Metatranscriptome	495	N
F003327	Metagenome / Metatranscriptome	494	Y
F004234	Metagenome / Metatranscriptome	447	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209850_10048312	F003299	N/A	MCQLKTMTMKIYKVVFKTFDYWNGPVKLVTRIVEAYDADHVKQLIQKNDDLILLIEEV
Ga0209850_10048313	F003327	N/A	MTEFTQLAREVQDAIANGEYTHQKYLRFREWYFQNYEGSKRNANRDFRMFDLMYGLDVPIKNNDNEDI
Ga0209850_10048314	F004234	GAG	MNFINLFKRDNIYFSNWTTDYDSDVYIAGTIEPFTYDATETDDEYMSHFILNDANLNLLKSKL